Mario Valle Web

Refereed papers

  1. Moretti, S., Laurenczy, B., Gharib, W. H., Castella, B., Kuzniar, A., Schabauer, H., Studer, R. A., Valle, M., Salamin, N., Stockinger, H., & Robinson-Rechavi, M. (2014). Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Research, 42(D1), D917–D921. [ url | doi | bib ]
  2. Valle, M., Schabauer, H., Pacher, C., Stockinger, H., Stamatakis, A., Robinson-Rechavi, M., & Salamin, N. (2014). Optimisation strategies for fast detection of positive selection on phylogenetic trees. Bioinformatics, 30(8), 1129–1137. [ url | doi | bib ]
  3. Valle, M. (2013). Visualization: A Cognition Amplifier. International Journal of Quantum Chemistry, 113(17), 2040–2052. [ doi | bib ]
  4. Oganov, A. R., Lyakhov, A. O., & Valle, M. (2011). How Evolutionary Crystal Structure Prediction Works — and Why. Accounts of Chemical Research, 44(3), 227–237. [ url | doi | bib ]
  5. Lyakhov, A. O., Oganov, A. R., & Valle, M. (2010). How to predict very large and complex crystal structures. Computer Physics Communications, 181(9), 1623–1632. [ url | doi | bib ]
  6. Valle, M., & Oganov, A. R. (2010). Crystal fingerprint space – a novel paradigm for studying crystal-structure sets. Acta Crystallographica Section A, 66(5), 507–517.
    (PDF from the publisher of Foundations of Crystallography Online) [ pdf | doi | publisher site | bib ]
  7. Oganov, A. R., Ma, Y., Lyakhov, A. O., Valle, M., & Gatti, C. (2010). Evolutionary Crystal Structure Prediction as a Method for the Discovery of Minerals and Materials. Reviews in Mineralogy and Geochemistry, 71(1), 271–298. [ url | doi | bib ]
  8. Ma, Y., Eremets, M., Oganov, A. R., Xie, Y., Trojan, I., Medvedev, S., Lyakhov, A. O., Valle, M., & Prakapenka, V. (2009). Transparent dense sodium. Nature, 458(7235), 182–185. [ doi | bib ]
  9. Oganov, A. R., & Valle, M. (2009). How to quantify energy landscapes of solids. The Journal of Chemical Physics, 130(10), 104504. [ url | doi | bib ]
  10. Valle, M. (2005). STM3: a chemistry visualization platform. Zeitschrift Für Kristallographie, 220(5–6), 585–588.
    (PDF from the publisher: Oldenbourg Wissenschaftsverlag, München) [ pdf | publisher site | bib ]
  11. Cocito, S., Sgorbini, S., Peirano, A., & Valle, M. (2003). 3-D reconstruction of biological objects using underwater video technique and image processing. Journal of Experimental Marine Biology and Ecology, 297(1), 57–70. [ pdf | doi | bib ]

Books and book chapters

  1. Schwardmann, U., Fenner, M., Hellström, M., Koers, H., L’Hours, H., Matthews, B., Ritz, R., Valle, M., Sanden, M., & Zamani, T. (2021). PID architecture for the EOSC: report from the EOSC Executive Board Working Group (WG) Architecture PID Task Force (TF). European Commission and Directorate-General for Research and Innovation Publications Office. [ doi | bib ]
  2. Hellström, M., Heughebaert, A., Kotarski, R., Manghi, P., Matthews, B., Ritz, R., Sparre Conrad, A., Valle, M., Weigel, T., & Wittenburg, P. (2020). A Persistent Identifier (PID) policy for the European Open Science Cloud (EOSC). European Commission and Directorate-General for Research and Innovation Publications Office. [ doi | bib ]
  3. Lyakhov, A. O., Oganov, A. R., & Valle, M. (2010). Crystal Structure Prediction Using Evolutionary Approach. In A. R. Oganov (Ed.), Modern Methods of Crystal Structure Prediction. Wiley-VCH. [ url | bib ]
  4. Oganov, A. R., Ma, Y., Lyakhov, A., Valle, M., & Gatti, C. (2010). Evolutionary crystal structure prediction and novel high-pressure phases. In E. Boldyreva & P. Dera (Eds.), High-Pressure Crystallography: From Fundamental Phenomena to Technological Applications (pp. 293–325). Springer. [ bib ]
  5. Favre, J., & Valle, M. (2004). AVS and AVS/Express. In C. Hansen & C. Johnson (Eds.), The Visualization Handbook (pp. 655–672). Academic Press. [ url | bib ]
  6. Marmo, R., Valle, M., & Zannoni, C. (2004). Introduzione alla visualizzazione scientifica. Editrice Il Rostro. [ url | bib ]

Conference papers and posters

  1. Rigano, A., Galli, V., Giulietti, R., Leidi, T., Valle, M., Sbalzarini, I. F., & Castillia, C. S. D. (2015). OMEGA: an open source environment to facilitate the execution of motion analysis workflows, to estimate error and to share results. 10th Annual OME Users Meeting.
    (poster) [ conference site | bib ]
  2. Valle, M. (2014). Crystal fingerprints space a novel paradigm to study crystal structures sets. 2nd Joint AIC-SILS Conference, 92. [ bib ]
  3. Schabauer, H., Valle, M., Pacher, C., Stockinger, H., Stamatakis, A., Robinson-Rechavi, M., & Salamin, N. (2013). FastCodeML: Optimizing and Parallelizing CodeML for the Branch-Site Model. SIB Days 2013.
    (poster) [ conference site | bib ]
  4. Schabauer, H., Valle, M., Pacher, C., Stockinger, H., Stamatakis, A., Robinson-Rechavi, M., Yang, Z., & Salamin, N. (2012). SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model. IEEE International Workshop on High Performance Computational Biology (HiCOMB’12). [ conference site | bib ]
  5. Schabauer, H., Valle, M., Stockinger, H., Salamin, N., & Robinson-Rechavi, M. (2011). Toward a Supercomputing Approach to Large Scale Darwinian Evolution. Phylogenetics: New Data, New Phylogenetic Challenges.
    (poster) [ conference site | bib ]
  6. Lyakhov, A. O., Oganov, A., & Valle, M. (2008). Increasing the effectiveness of evolutionary crystal structure prediction using fingerprint function. Acta Crystallographica Section A, 64(a1), C206. [ doi | bib ]
  7. Oganov, A. R., Valle, M., Lyakhov, A., Ma, Y., & Xie, Y. (2008). Evolutionary crystal structure prediction and its applications to materials at extreme conditions. Acta Crystallographica Section A, 64(a1), C41–C42. [ doi | bib ]
  8. Valle, M., & Oganov, A. R. (2008). Crystal Structures Classifier for an Evolutionary Algorithm Structure Predictor. Visual Analytics Science and Technology, 2008. VAST ’08. IEEE Symposium On, 11–18.
    (One of the paper images has been selected for the proceedings’ cover) [ url | doi | conference site | bib ]
  9. Valle, M. (2007). Chemistry visualization tools in an integrated discovery cycle. EGEE’07 Conference, 99. [ url | bib ]
  10. Perrig, A., Valle, M., Farhat, M., Parkinson, E., Favre, J., & Avellan, F. (2006). Onboard flow visualization in a Pelton turbine bucket. Proceedings of the 23rd IAHR Symposium on Hydraulic Machinery and Systems. [ conference site | bib ]
  11. Valle, M. (2006a). Representations that promote cognition: the case of chemistry visualization tools. Proceeding of the Third Symposium on Applied Perception in Graphics and Visualization.
    (poster) [ conference site | bib ]
  12. Valle, M. (2006b). Representations that promote cognition: the case of chemistry visualization tools. Proceeding of SIGGRAPH 2006.
    (poster) [ conference site | bib ]
  13. Valle, M. (2006c). Visualization support to chemistry research. Proceeding of IEEE Visualization 2006.
    (poster - selected as one of the 5 Best Poster Candidates of IEEE Visualization 2006) [ conference site | bib ]
  14. Marmo, R., & Valle, M. (2005). Visual attention mechanisms for information visualization. In V. Cantoni & others (Eds.), HUMAN AND MACHINE PERCEPTION: Communication, Interaction and Integration (pp. 111–118). World Scientific Publishing. [ url | conference site | bib ]
  15. Valle, M., Favre, J., Parkinson, E., Perrig, A., & Farhat, M. (2005). Scientific Data Management for Visualization Implementation Experience. Proceedings Simulation and Visualization 2005. [ pdf | conference site | bib ]
  16. Perrig, A., Valle, M., Farhat, M., Parkinson, E., Favre, J., & Avellan, F. (2004). Numerical Flow Analysis in a Pelton Turbine Bucket. Proceedings of the 22nd IAHR Symposium on Hydraulic Machinery and Systems. [ conference site | bib ]
  17. Favre, J., & Valle, M. (2003). An In-House Development for Visualization in Molecular Science. Fourth LACSI Symposium.
    (poster) [ conference site | bib ]

Other (not refereed or for non specialists)

  1. Rigano, A., Galli, V., Clark, J. M., Pereira, L. E., Grossi, L., Luban, J., Giulietti, R., Leidi, T., Hunter, E., Valle, M., Sbalzarini, I. F., & Strambio-De-Castillia, C. (2018). OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control. bioRxiv. [ url | doi | bib ]
  2. Valle, M. (2009). Vedere per capire. archi - rivista svizzera di architettura, ingegneria e urbanistica, 3, 65–68. [ bib ]
  3. Oganov, A. R., Ma, Y., Glass, C. W., & Valle, M. (2007). Evolutionary crystal structure prediction: overview of the USPEX method and some of its applications. Psi-k Newsletter, 84, 1–10. [ pdf | bib ]
  4. Marmo, R., & Valle, M. (2005). Visualizzazione scientifica: un aiuto per capire. Mondo Digitale (AICA), anno IV(4), 45–58. [ pdf | bib ]
  5. Valle, M. (2002). User-in-the-loop: Supporto al Computational Steering in ambiente di simulazione. Virtuality 2002. [ conference site | bib ]
  6. Valle, M. (2001). Un sistema di visualizzazione immersiva ad alte prestazioni. Virtuality 2001. [ conference site | bib ]

Montessori related

  1. Valle, M., & Galgano, A. (2023). La libertà (Vol. 19). Corriere della Sera. [ bib ]
  2. Valle, M. (2022b). Montessori Pädagogik und neue Medien. Das Kind, 70/71, 46–58. [ bib ]
  3. Valle, M. (2022a). I nostri “abitanti del futuro” e il pensiero computazionale. Vita dell’Infanzia, LXXI(9/10), 28–37. [ bib ]
  4. Valle, M. (2022c). მონტესორის პედაგოგიკა და ახალი ტექნოლოგიები (M. Turabelidze, Trans.). SAGA.
    Georgian translation of (Valle, 2017) [ url | bib ]
  5. Valle, M. (2021b). Le tecnologie digitali in famiglia. Il leone verde. [ url | bib ]
  6. Valle, M. (2021a). La tecnologia digitale in casa. In G. H. Fresco & S. Honegger (Eds.), Una casa a misura di bambino (pp. 94–105). Edizioni Red. [ bib ]
  7. Valle, M. (2020b). Bambini scienziati. Liber, XXXIII(128), 60–61. [ url | bib ]
  8. Valle, M. (2020a). Montessori attraverso gli occhi di uno scienziato. Senza Zaino, 1(2), 37–40. [ bib ]
  9. Valle, M. (2019). Montessori-Pädagogik und neue Technologien. Eine mögliche Integration? (W. Wedekind, Trans.). LIT Verlag.
    German translation of (Valle, 2017) [ url | bib ]
  10. Valle, M. (2018). L’adolescente Montessori e la sua scuola. Vita Dell’Infanzia, LXVII(3/4), 4–5. [ bib ]
  11. Valle, M. (2017). La pedagogia Montessori e le nuove tecnologie. il leone verde. [ url | bib ]
  12. Valle, M., & Fresco, G. H. (2016a). Le domande più frequenti su Montessori (I). Il Quaderno Montessori, 128, 24–27. [ bib ]
  13. Valle, M., & Fresco, G. H. (2016b). Le domande più frequenti su Montessori (II). Il Quaderno Montessori, 130, 38–39. [ bib ]
  14. Valle, M. (2015). Ansichten eines Wissenschaftlers zu Maria Montessoris Erzählung von Gott, der keine Hände hat. In E. Eckert & M. Fehrer (Eds.), Kosmische Erzählungen in der Montessori-Pädagogik (Third ed., pp. 57–70). LIT Verlag. [ url | bib ]
  15. Valle, M. (2014). Durch die Augen eines Wissenschaftlers – Ein ungewohnter Blick auf Montessori. Das Kind, 55, 43–59. [ bib ]
  16. Valle, M. (2013b). Una mappa concettuale. Il Quaderno Montessori, 117, 50–51. [ bib ]
  17. Valle, M. (2013a). La madre di tutte le obiezioni. Il Quaderno Montessori, 118/119, 23–25. [ bib ]
  18. Valle, M. (2012). More is different. Il Quaderno Montessori, 113, 52–56. [ bib ]
  19. Valle, M. (2009). Supercalcolatori e superbambini. Il Quaderno Montessori, 100, 9–15. [ bib ]